PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G252600.1
Common NameB456_001G252600, LOC105771769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 224aa    MW: 25269 Da    PI: 4.3645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G252600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1890140255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd + +g  +r++lg+f++ae Aa a+++a+ +++g
  Gorai.001G252600.1  90 SYRGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDSAEAAALAYDQAAFSMRG 140
                         69*******.**********43343..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.02E-1989149No hitNo description
PROSITE profilePS5103223.02490148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3090149IPR001471AP2/ERF domain
SMARTSM003802.1E-3590154IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2290150IPR016177DNA-binding domain
PfamPF008474.7E-1490140IPR001471AP2/ERF domain
PRINTSPR003672.7E-1091102IPR001471AP2/ERF domain
PRINTSPR003672.7E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEDSWLLQYS KNADSSWFGS EEAFSSSCEW DELLLNFNIS QETAWMDLLG DDEEEEEEER  60
GKVSSECSNN SIDGVKEEEI CAEEPKEVKS YRGVRKRPWG KFAAEIRDST RRGARVWLGT  120
FDSAEAAALA YDQAAFSMRG PLATLNFPIE AVKASLKELK GPCDEDKGWS PVVDLKNRYS  180
LRKRSKNKKI KPNDAALRQQ QNLLVFEDLG ADYLEQLLTS SCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2689150465ATERF1
3gcc_A1e-2689150465ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188LRKRSKNKK
2182188KRSKNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157210.0JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448621.11e-162PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC86e-51ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2M2X01e-162A0A0D2M2X0_G
STRINGVIT_05s0049g00510.t015e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1898938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-42ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]